Index

A

add_derivative_data() (dataset.Dataset method) add_path() (metadata.Sample method) add_property() (schema.Schema method) add_samples() (metadata.Subject method)

add_subjects() (dataset.Dataset method) add_thumbnail() (dataset.Dataset method) add_values() (metadata.Metadata method) api_tools module

C

CaseInsensitiveDict (class in utils) check_row_exist() (in module utils) clear_values() (metadata.Metadata method) convert_schema_excel_to_json() (schema.Schema method)

convert_version_format() (in module schema) count (metadata.Sample attribute) (metadata.Subject attribute) create_empty_dataset() (dataset.Dataset method)

D

dataset module Dataset (class in dataset) Dataset_Api (class in api_tools) delete_data() (dataset.Dataset method)

delete_sample() (dataset.Dataset method) delete_samples() (dataset.Dataset method) delete_subject() (dataset.Dataset method) delete_subjects() (dataset.Dataset method) download_dataset() (api_tools.Dataset_Api method)

F

find_col_element() (in module utils)

G

generate_from_template() (schema.Schema method) generate_validate_data() (schema.Schema method) get() (utils.CaseInsensitiveDict method) get_all_datasets_all_versions() (api_tools.Dataset_Api method) get_all_datasets_latest_version_pensieve() (api_tools.Dataset_Api method) get_all_files_path() (api_tools.Dataset_Api method) get_dataset() (dataset.Dataset method) get_dataset_latest_version_number() (api_tools.Dataset_Api method) get_dataset_latest_version_pensieve() (api_tools.Dataset_Api method) get_dataset_path() (dataset.Dataset method) get_dataset_protocolsio_link() (api_tools.Dataset_Api method) get_dataset_versions_pensieve() (api_tools.Dataset_Api method)

get_default_schema() (schema.Schema static method) get_metadata() (dataset.Dataset method) get_metadata_pensieve() (api_tools.Dataset_Api method) get_protocolsio_text() (api_tools.Dataset_Api method) get_sample() (metadata.Subject method) get_sample_id() (metadata.Sample method) get_schema() (schema.Schema method) get_sub_folder_paths_in_folder() (in module utils) get_subject() (dataset.Dataset method) get_UBERONs_From_Dataset() (api_tools.Dataset_Api method) get_values() (metadata.Metadata method) get_xlsx_csv_file_pennsieve() (api_tools.Dataset_Api method)

L

list_elements() (dataset.Dataset method) list_metadata_files() (dataset.Dataset method)

load_data() (schema.Schema method) load_dataset() (dataset.Dataset method) load_metadata() (dataset.Dataset method)

M

metadata module Metadata (class in metadata) module api_tools dataset metadata schema utils

move() (metadata.Sample method) (metadata.Subject method)

R

remove_row() (metadata.Metadata method) remove_spaces_and_lower() (in module utils) remove_thumbnail() (dataset.Dataset method)

remove_values() (metadata.Metadata method) (metadata.Sample method) (metadata.Subject method)

S

Sample (class in metadata) save() (dataset.Dataset method) (metadata.Metadata method) (metadata.Sample method) (metadata.Subject method) (schema.Schema method) schema module Schema (class in schema) set_col_values() (metadata.Metadata method)

set_path() (dataset.Dataset method) (metadata.Sample method) set_row_values() (metadata.Metadata method) set_schema() (schema.Schema method) set_subject_id() (metadata.Sample method) set_value() (metadata.Sample method) (metadata.Subject method) set_values() (metadata.Metadata method) (metadata.Sample method) (metadata.Subject method) Subject (class in metadata)

U

update_by_json() (dataset.Dataset method)

utils module

V

validate() (schema.Validator method) validate_dataset() (schema.Validator method) validate_input() (metadata.Metadata method)

validate_metadata_file() (in module utils) validate_sub_sam_name() (in module utils) Validator (class in schema)